Breakthrough in Bacterial Computing

  • 25 Nov 2024

In News:

Scientists at the Saha Institute of Nuclear Physics in Kolkatahave successfully engineered bacteria capable of solving mathematical problems, marking a major step forward in the field of synthetic biology and biocomputing. These engineered bacteria can function like artificial neural networks, performing tasks that were traditionally reserved for humans or conventional computers.

Key Highlights:

  • Bacterial Computers:
    • The research team introduced genetic circuits into bacteria, turning them into computational units capable of tasks like determining whether a number is prime or identifying vowels in an alphabet.
    • These bacterial "computers" mimic artificial neural networks (ANNs), where each type of engineered bacterium (called a "bactoneuron") behaves like a node in a network, processing inputs to generate outputs.
  • How it Works:
    • The bacteria's genetic circuits are activated by chemical inducers, which represent binary 0s and 1s (the fundamental language of computing). The presence or absence of certain chemicals determines whether a bacterium expresses a specific fluorescent protein, representing the binary states.
    • For example, when asked if a number between 0-9 is prime, the bacteria can express green fluorescent proteins (1) for "yes" or red fluorescent proteins (0) for "no", providing binary outputs that solve the problem.
  • Complex Tasks:
    • The team advanced to more complex tasks, such as asking the bacterial computers whether adding a number (like 2 + 3) results in a prime number or if a number's square can be expressed as the sum of factorials.
    • In an even more complex test, the bacteria solved an optimization problem—calculating the maximum number of pieces a pie could be cut into with a given number of straight cuts. The bacteria’s fluorescent output represented binary numbers that were converted to decimal for the correct solution.
  • Technical Details:
    • The researchers used Escherichia coli (E. coli) bacteria, engineered with transcriptional genetic circuits, which recognize specific DNA sequences and trigger the expression of proteins based on the presence of chemical inducers.
    • The system is similar to how ANNs work in traditional computing, where nodes (bactoneurons) take inputs, apply weights, and produce outputs based on activation functions.
  • Implications and Future Prospects:
    • Synthetic Biology & Biomanufacturing: This breakthrough could revolutionize industries such as pharmaceuticals and biomanufacturing by enabling biocomputers that perform specific tasks in a biological environment, potentially reducing reliance on silicon-based computers.
    • Medical Applications: The ability of engineered bacteria to process data could lead to biocomputers capable of diagnosing diseases (such as cancer) at an early stage and even administering localized treatments.
    • Understanding Intelligence: Bagh and his team hope to explore the biochemical nature of intelligence, pondering how intelligence could emerge from simple, single-celled organisms.
  • Groundbreaking Research:
    • The research, published in Nature Chemical Biology, has drawn significant attention in the synthetic biology community. Centre for Synthetic Biology highlighting the potential of bacteria programmed to solve complex problems.

This innovative work paves the way for future developments in biocomputing, where living organisms, instead of silicon chips, could be used to perform sophisticated calculations, offering new ways to think about computing, intelligence, and even the future of technology in medicine.